Planning
| Time |
Event |
|
|
14:00 - 18:45
|
Arrival - Arrival |
|
|
19:30 - 21:00
|
Dinner |
|
| Time |
Event |
|
|
07:45 - 08:30
|
Breakfast |
|
|
08:30 - 08:45
|
Introduction |
|
|
08:45 - 10:15
|
Lavery 1 - DNA fine structure and conformation flexibility |
|
|
10:15 - 10:45
|
Coffee break |
|
|
10:45 - 12:15
|
Schiessel 1 - DNA as a wormlike chain (Euler elastica, Kirchhoff analogy, stretching DNA under an external force) |
|
|
12:15 - 14:00
|
Lunch |
|
|
17:15 - 18:45
|
Lavery 2 - All-atom molecular simulation techniques for nucleic acids |
|
|
19:30 - 21:00
|
Dinner |
|
| Time |
Event |
|
|
07:45 - 08:45
|
Breakfast |
|
|
08:45 - 10:15
|
Schiessel 2 - Nucleosome as a DNA spool (nucleosome breathing and force-induced unwrapping) |
|
|
10:15 - 10:45
|
Coffee break |
|
|
10:45 - 12:15
|
Lavery 3 - Modeling DNA structure and dynamics |
|
|
12:15 - 14:00
|
Lunch |
|
|
14:00 - 16:00
|
Practical work |
|
|
17:15 - 18:45
|
de Pablo 1 - Coarse grain models of DNA, and the role of hydrodynamic interactions in dynamics |
|
|
19:30 - 21:00
|
Dinner |
|
| Time |
Event |
|
|
07:45 - 08:45
|
Breakfast |
|
|
08:45 - 10:15
|
Lavery 4 - Modeling DNA-ligand and DNA-protein interactions |
|
|
10:15 - 10:45
|
Coffee break |
|
|
10:45 - 12:15
|
de Pablo 2 - Atomistic and mesoscale models of DNA, their advantages and limitations |
|
|
12:15 - 14:00
|
Lunch |
|
|
14:00 - 16:00
|
Practical work |
|
|
17:15 - 18:45
|
Schiessel 3 - Chromatin fiber as a problem in geometry (two-angle model, multi-ribbon model) |
|
|
19:30 - 21:00
|
Dinner |
|
| Time |
Event |
|
|
07:45 - 08:45
|
Breakfast |
|
|
08:45 - 10:15
|
de Pablo 3 - Coarse-grained models of DNA-histone interactions, and relevance for the study of chromatin |
|
|
10:15 - 10:45
|
Coffee break |
|
|
10:45 - 12:15
|
Weigt 1 - Regulatory DNA motifs I: From the biophysics of protein-DNA interaction to the bioinformatics of transcription factor binding sites |
|
|
12:15 - 14:00
|
Lunch |
|
|
14:00 - 16:00
|
Practical work |
|
|
17:15 - 18:45
|
Seminar: Everaers - Universal Aspects of Chromosome Folding |
|
|
19:30 - 21:00
|
Dinner |
|
| Time |
Event |
|
|
07:45 - 08:45
|
Breakfast |
|
|
08:45 - 10:15
|
Weigt 2 - How similar are two biological sequences: Algorithms for sequence alignment |
|
|
10:15 - 10:45
|
Coffee break |
|
|
10:45 - 12:15
|
Arneodo 1 - Long-range correlations in eukaryotic DNA: a footprint of nucleosome packaging |
|
|
12:15 - 14:00
|
Lunch |
|
|
19:30 - 21:00
|
Dinner |
|
| Time |
Event |
|
|
07:45 - 08:45
|
Breakfast |
|
|
12:15 - 14:00
|
Lunch |
|
|
19:30 - 21:00
|
Dinner |
|
| Time |
Event |
|
|
07:45 - 08:45
|
Breakfast |
|
|
08:45 - 10:15
|
Schiessel 4 - Chromosome as a fractal globule (internal distances, contact probabilities, molten vs. fractal globule) |
|
|
10:15 - 10:45
|
Coffee break |
|
|
10:45 - 12:15
|
Weigt 3 - Regulatory DNA motifs II: Using phylogeny for motif inference |
|
|
12:15 - 14:00
|
Lunch |
|
|
14:00 - 16:00
|
Practical work |
|
|
17:15 - 18:45
|
ten Wolde 1 - Overview of noise in biochemical networks |
|
|
19:30 - 21:00
|
Dinner |
|
| Time |
Event |
|
|
07:45 - 08:45
|
Breakfast |
|
|
08:45 - 10:15
|
ten Wolde 2 - Modeling biochemical networks |
|
|
10:15 - 10:45
|
Coffee break |
|
|
10:45 - 12:15
|
Arneodo 2 - DNA sequence effect on the nucleosomal organization of the eukaryotic chromatin fiber |
|
|
12:15 - 14:00
|
Lunch |
|
|
17:15 - 18:45
|
Weigt 4 - Co-evolution in proteins: From maximum-entropy modeling of protein families to 3D protein structure prediction |
|
|
19:30 - 21:00
|
Dinner |
|
| Time |
Event |
|
|
07:45 - 08:45
|
Breakfast |
|
|
08:45 - 10:15
|
Arneodo 3 - Large-scale analysis of genomic sequences: from the detection of replication origins to the modeling of replication in higher eukaryotes |
|
|
10:15 - 10:45
|
Coffee break |
|
|
10:45 - 12:15
|
ten Wolde 3 - Simulating biochemical networks |
|
|
12:15 - 14:00
|
Lunch |
|
|
14:00 - 16:00
|
Practical work |
|
|
17:15 - 18:45
|
Seminar: Rivoire - |
|
|
19:30 - 21:00
|
Dinner |
|
| Time |
Event |
|
|
07:45 - 08:45
|
Breakfast |
|
|
08:45 - 10:15
|
ten Wolde 4 - Quantifying information transmission in biochemical networks using measures from information theory |
|
|
10:15 - 10:45
|
Coffee break |
|
|
10:45 - 12:15
|
Arneodo 4 - Spatio-temporal organization of replication: On genome evolution and large-scale chromatin folding |
|
|
12:15 - 14:00
|
Lunch |
|
|
14:00 - 16:00
|
Practical work |
|
|
17:15 - 18:45
|
Presentations by participants |
|
|
19:30 - 21:00
|
Dinner |
|
| Time |
Event |
|
|
07:45 - 08:45
|
Breakfast |
|
|
08:45 - 10:15
|
Presentations by participants |
|
|
10:15 - 10:45
|
Break |
|
|
10:45 - 12:15
|
Presentations by participants |
|
|
12:15 - 14:00
|
Lunch |
|
|
14:00 - 18:45
|
Departure - Departure |
|
|
